Sarah Cohen-Boulakia's publications

Publications

The complete list of my publications can also be found on my google scholar page (with some bibliometry information).

[56] Van Thu Nguyen, Philippe Rivière, Pierre Ripoll, Julien Barnier, Romain Vuillemot, Gabriel Ferrand, Sarah Cohen-Boulakia, Philippe Ravaud, Isabelle Boutron and COVID-NMA consortium. Research response to coronavirus disease 2019 needed better coordination and collaboration: a living mapping of registered trials. Journal of Clinical Epidemiology 130:107 - 116, 2021. URL, DOI BibTeX

@article{NGUYEN2021107,
	idweb = 56,
	title = "Research response to coronavirus disease 2019 needed better coordination and collaboration: a living mapping of registered trials",
	journal = "Journal of Clinical Epidemiology",
	volume = 130,
	pages = "107 - 116",
	year = 2021,
	issn = "0895-4356",
	doi = "https://doi.org/10.1016/j.jclinepi.2020.10.010",
	url = "http://www.sciencedirect.com/science/article/pii/S0895435620311495",
	keywords = "COVID-19, Clinical trial, Systematic review, Living mapping, Meta-analysis, Treatment, Prevention",
	author = "Van Thu Nguyen and Philippe Rivière and Pierre Ripoll and Julien Barnier and Romain Vuillemot and Gabriel Ferrand and Sarah Cohen-Boulakia and Philippe Ravaud and Isabelle Boutron and the COVID-NMA consortium",
	abstract = "Objectives Researchers worldwide are actively engaging in research activities to search for preventive and therapeutic interventions against coronavirus disease 2019 (COVID-19). Our aim was to describe the planning of randomized controlled trials (RCTs) in terms of timing related to the course of the COVID-19 epidemic and research question evaluated. Study Design and Setting We performed a living mapping of RCTs registered in the WHO International Clinical Trials Registry Platform. We systematically search the platform every week for all RCTs evaluating preventive interventions and treatments for COVID-19 and created a publicly available interactive mapping tool at https://covid-nma.com to visualize all trials registered. Results By August 12, 2020, 1,568 trials for COVID-19 were registered worldwide. Overall, the median ([Q1–Q3]; range) delay between the first case recorded in each country and the first RCT registered was 47 days ([33–67]; 15–163). For the 9 countries with the highest number of trials registered, most trials were registered after the peak of the epidemic (from 100% trials in Italy to 38% in the United States). Most trials evaluated treatments (1,333 trials; 85%); only 223 (14%) evaluated preventive strategies and 12 postacute period intervention. A total of 254 trials were planned to assess different regimens of hydroxychloroquine with an expected sample size of 110,883 patients. Conclusion This living mapping analysis showed that COVID-19 trials have relatively small sample size with certain redundancy in research questions. Most trials were registered when the first peak of the pandemic has passed."
}

[55] Carole Goble, Sarah Cohen-Boulakia, Stian Soiland-Reyes, Daniel Garijo, Yolanda Gil, Michael R Crusoe, Kristian Peters and Daniel Schober. FAIR Computational Workflows. Data Intelligence 2(1-2):108-121, 2020. URL, DOI BibTeX

@article{doi:10.1162/dint\_a\_00033,
	idweb = 55,
	author = "Goble, Carole and Cohen-Boulakia, Sarah and Soiland-Reyes, Stian and Garijo, Daniel and Gil, Yolanda and Crusoe, Michael R. and Peters, Kristian and Schober, Daniel",
	title = "FAIR Computational Workflows",
	journal = "Data Intelligence",
	volume = 2,
	number = "1-2",
	pages = "108-121",
	year = 2020,
	doi = "10.1162/dint\_a\_00033",
	url = "https://doi.org/10.1162/dint_a_00033",
	eprint = "https://doi.org/10.1162/dint_a_00033",
	abstract = "Computational workflows describe the complex multi-step methods that are used for data collection, data preparation, analytics, predictive modelling, and simulation that lead to new data products. They can inherently contribute to the FAIR data principles: by processing data according to established metadata; by creating metadata themselves during the processing of data; and by tracking and recording data provenance. These properties aid data quality assessment and contribute to secondary data usage. Moreover, workflows are digital objects in their own right. This paper argues that FAIR principles for workflows need to address their specific nature in terms of their composition of executable software steps, their provenance, and their development."
}

[54] Simon Artzet, Tsu Wei Chen, Jérôme Chopard, Nicolas Brichet, Michael Mielewczik, Sarah Cohen-Boulakia, Llorenç Cabrera Bosquet, Francois Tardieu, Christian Fournier and Christophe Pradal. Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping. 2019 URL PDF, DOI BibTeX

@unpublished{artzet:hal-02788579,
	idweb = 54,
	title = "{Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping}",
	author = "Artzet, Simon and Chen, Tsu Wei and Chopard, J{\'e}r{\^o}me and Brichet, Nicolas and Mielewczik, Michael and Cohen-Boulakia, Sarah and Cabrera Bosquet, Lloren\c{c} and Tardieu, Francois and Fournier, Christian and Pradal, Christophe",
	url = "https://hal.inrae.fr/hal-02788579",
	note = "working paper or preprint",
	year = 2019,
	doi = "10.1101/805739",
	keywords = "3D reconstruction ; Scientific workflow ; Image analysis ; Open source ; Automatic pipeline",
	pdf = "https://hal.inrae.fr/hal-02788579/file/Artzet-BioArxiv-2019-CC-BY-NC-ND_1.pdf",
	hal_id = "hal-02788579",
	hal_version = "v1"
}

[53] P Andrieu, B Brancotte, L Bulteau, S Cohen-Boulakia, A Denise, A Pierrot and S Vialette. Reliability-Aware and Graph-Based Approach for Rank Aggregation of Biological Data. In 2019 15th International Conference on eScience (eScience) (). 2019, 136-145. DOI BibTeX

@inproceedings{9041742,
	idweb = 53,
	author = "P. {Andrieu} and B. {Brancotte} and L. {Bulteau} and S. {Cohen-Boulakia} and A. {Denise} and A. {Pierrot} and S. {Vialette}",
	booktitle = "2019 15th International Conference on eScience (eScience)",
	title = "Reliability-Aware and Graph-Based Approach for Rank Aggregation of Biological Data",
	year = 2019,
	volume = "",
	number = "",
	pages = "136-145",
	doi = "10.1109/eScience.2019.00022"
}

[52] Frédéric Lemoine, Damien Correia, Vincent Lefort, Olivia Doppelt-Azeroual, Fabien Mareuil, Sarah Cohen-Boulakia and Olivier Gascuel. NGPhylogeny.fr: new generation phylogenetic services for non-specialists. Nucleic Acids Research 47(W1):W260-W265, April 2019. URL, DOI BibTeX

@article{10.1093/nar/gkz303,
	idweb = 52,
	author = "Lemoine, Frédéric and Correia, Damien and Lefort, Vincent and Doppelt-Azeroual, Olivia and Mareuil, Fabien and Cohen-Boulakia, Sarah and Gascuel, Olivier",
	title = "{NGPhylogeny.fr: new generation phylogenetic services for non-specialists}",
	journal = "Nucleic Acids Research",
	volume = 47,
	number = "W1",
	pages = "W260-W265",
	year = 2019,
	month = 04,
	abstract = "{Phylogeny.fr, created in 2008, has been designed to facilitate the execution of phylogenetic workflows, and is nowadays widely used. However, since its development, user needs have evolved, new tools and workflows have been published, and the number of jobs has increased dramatically, thus promoting new practices, which motivated its refactoring. We developed NGPhylogeny.fr to be more flexible in terms of tools and workflows, easily installable, and more scalable. It integrates numerous tools in their latest version (e.g. TNT, FastME, MrBayes, etc.) as well as new ones designed in the last ten years (e.g. PhyML, SMS, FastTree, trimAl, BOOSTER, etc.). These tools cover a large range of usage (sequence searching, multiple sequence alignment, model selection, tree inference and tree drawing) and a large panel of standard methods (distance, parsimony, maximum likelihood and Bayesian). They are integrated in workflows, which have been already configured (‘One click’), can be customized (‘Advanced’), or are built from scratch (‘A la carte’). Workflows are managed and run by an underlying Galaxy workflow system, which makes workflows more scalable in terms of number of jobs and size of data. NGPhylogeny.fr is deployable on any server or personal computer, and is freely accessible at https://ngphylogeny.fr.}",
	issn = "0305-1048",
	doi = "10.1093/nar/gkz303",
	url = "https://doi.org/10.1093/nar/gkz303",
	eprint = "https://academic.oup.com/nar/article-pdf/47/W1/W260/28879782/gkz303.pdf"
}

[51] C Pradal, S Cohen-Boulakia, P Valduriez and D Shasha. VersionClimber: Version Upgrades Without Tears. Computing in Science Engineering 21(5):87-93, 2019. DOI BibTeX

@article{8798946,
	idweb = 51,
	author = "C. {Pradal} and S. {Cohen-Boulakia} and P. {Valduriez} and D. {Shasha}",
	journal = "Computing in Science Engineering",
	title = "VersionClimber: Version Upgrades Without Tears",
	year = 2019,
	volume = 21,
	number = 5,
	pages = "87-93",
	doi = "10.1109/MCSE.2019.2921898"
}

[50] Karima Rafes, Serge Abiteboul, Sarah Cohen-Boulakia and Bastien Rance. Designing scientific SPARQL queries using autocompletion by snippets. In Proc. of the 14th IEEE International Conference in eScience. 2018. BibTeX

@inproceedings{escience2018,
	idweb = 50,
	author = "Karima Rafes and Serge Abiteboul and Sarah Cohen-Boulakia and Bastien Rance",
	title = "Designing scientific SPARQL queries using autocompletion by snippets",
	booktitle = "Proc. of the 14th IEEE International Conference in eScience",
	year = 2018,
	type_digiteo = "conf_isbn"
}

[49] Aurélien Naldi, Céline Hernandez, Nicolas Levy, Gautier Stoll, Pedro T Monteiro, Claudine Chaouiya, Tomá\v Helikar, Andrei Zinovyev, Laurence Calzone, Sarah Cohen-Boulakia, Denis Thieffry and Loïc Paulevé. The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks. Frontiers in Physiology 9:680, 2018. DOI BibTeX

@article{ColomotoNotebook2018,
	idweb = 49,
	author = {Naldi, Aur{\'e}lien and Hernandez, C{\'e}line and Levy, Nicolas and Stoll, Gautier and Monteiro, Pedro T. and Chaouiya, Claudine and Helikar, Tom{\'a}{\v s} and Zinovyev, Andrei and Calzone, Laurence and Cohen-Boulakia, Sarah and Thieffry, Denis and Paulev{\'e}, Lo{\"i}c},
	title = "{The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks}",
	journal = "{Frontiers in Physiology}",
	year = 2018,
	volume = 9,
	pages = 680,
	class = "journal",
	doi = "10.3389/fphys.2018.00680",
	hal_id = "hal-01794294",
	hal_version = "v1",
	keywords = "computational systems biology ; reproducibility ; model analysis ; Boolean networks ; Python programming language",
	publisher = "{Frontiers}"
}

[48] Olivier Collin Jerome Chopard Christine Froidevaux Alban Gaignard Konrad Hinsen Pierre Larmande Yvan Le Bras Frederic Lemoine Fabien Mareuil Herve Menager Christophe Pradal Christophe Blanchet Sarah Cohen-Boulakia Khalid Belhajjame. Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Generation Computer Systems, 2017. BibTeX

@article{repro,
	idweb = 48,
	title = "Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities",
	author = "Sarah Cohen-Boulakia, Khalid Belhajjame, Olivier Collin, Jerome Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frederic Lemoine, Fabien Mareuil, Herve Menager, Christophe Pradal, Christophe Blanchet",
	journal = "Future Generation Computer Systems",
	year = 2017
}

[47] Christophe Pradal, Simon Artzet, Jerome Chopard, Dimitri Dupuis, Christian Fournier, Michael Mielewczik, Vincent Negre, Pascal Neveu, Didier Parigot, Patrick Valduriez and Sarah Cohen-Boulakia. InfraPhenoGrid: A scientific workflow infrastructure for Plant Phenomics on the Grid. Future Generation Computer Systems, 2017. BibTeX

@article{infraphenogrid,
	idweb = 47,
	title = "InfraPhenoGrid: A scientific workflow infrastructure for Plant Phenomics on the Grid",
	author = "Christophe Pradal and Simon Artzet and Jerome Chopard and Dimitri Dupuis and Christian Fournier and Michael Mielewczik and Vincent Negre and Pascal Neveu and Didier Parigot and Patrick Valduriez and Sarah Cohen-Boulakia",
	journal = "Future Generation Computer Systems",
	year = 2017
}

[46] Johannes Starlinger, Sarah Cohen-Boulakia, Sanjeev Khanna, Susan Davidson and Ulf Leser. Effective and Efficient Similarity Search in Scientific Workflow Repositories . Future Generation Computer Systems, page 79, 2016. URL BibTeX

@article{starlinger:hal-01170597,
	idweb = 46,
	title = "{Effective and Efficient Similarity Search in Scientific Workflow Repositories }",
	author = "Johannes Starlinger and Sarah Cohen-Boulakia and Sanjeev Khanna and Susan Davidson and Ulf Leser",
	url = "https://hal.archives-ouvertes.fr/hal-01170597",
	journal = "{Future Generation Computer Systems}",
	publisher = "{Elsevier}",
	pages = 79,
	year = 2016,
	month = "",
	hal_id = "hal-01170597",
	hal_version = "v1"
}

[45] Christophe Pradal, Christian Fournier, Patrick Valduriez and Sarah Cohen-Boulakia. OpenAlea: Scientific Workflows Combining Data Analysis and Simulation. In SSDBM 2015: 27th International Conference on Scientific and Statistical Database Management. 2015. URL, DOI BibTeX

@inproceedings{pradal:hal-01166298,
	idweb = 45,
	title = "{OpenAlea: Scientific Workflows Combining Data Analysis and Simulation}",
	author = "Christophe Pradal and Christian Fournier and Patrick Valduriez and Sarah Cohen-Boulakia",
	url = "https://hal.archives-ouvertes.fr/hal-01166298",
	booktitle = "{SSDBM 2015: 27th International Conference on Scientific and Statistical Database Management}",
	address = "San Diego, United States",
	year = 2015,
	month = "",
	doi = "10.1145/2791347.2791365",
	hal_id = "hal-01166298",
	hal_version = "v1"
}

[44] Sarah Cohen-Boulakia and Patrick Valduriez. Interrogation et Gestion de donnees bioinformatiques pour la biologie moleculaire. Les Techniques de l'Ingenieur, page 30, June 2015. URL BibTeX

@article{cohenboulakia:hal-01160897,
	idweb = 44,
	title = "{Interrogation et Gestion de donnees bioinformatiques pour la biologie moleculaire}",
	author = "Sarah Cohen-Boulakia and Patrick Valduriez",
	url = "https://hal.inria.fr/hal-01160897",
	journal = "{Les Techniques de l'Ingenieur}",
	publisher = "{Editions T.I.}",
	pages = 30,
	year = 2015,
	month = "Jun",
	hal_id = "hal-01160897",
	hal_version = "v1"
}

[43] Bryan Brancotte, Bastien Rance, Alain Denise and Sarah Cohen-Boulakia. Interrogation de bases de données biologiques publiques par reformulation de requêtes et classement des résultats avec ConQuR-Bio. JOBIM (Journées Ouvertes Biologie Informatique Mathématiques), 2015. URL BibTeX

@misc{brancotte:hal-01167840,
	idweb = 43,
	title = "Interrogation de bases de donn{\'e}es biologiques publiques par reformulation de requ{\^e}tes et classement des r{\'e}sultats avec ConQuR-Bio",
	author = "Bryan Brancotte and Bastien Rance and Alain Denise and Sarah Cohen-Boulakia",
	url = "https://hal.archives-ouvertes.fr/hal-01167840",
	howpublished = "JOBIM (Journ{\'e}es Ouvertes Biologie Informatique Math{\'e}matiques)",
	year = 2015,
	month = "",
	hal_id = "hal-01167840",
	hal_version = "v1"
}

[42] Bryan Brancotte, Bo Yang, Guillaume Blin, Alain Denise Sarah Cohen-Boulakia and Sylvie Hamel. Rank aggregation with ties: Experiments and Analysis. Proceedings of the VLDB Endowment (PVLDB), 2015. URL BibTeX

@article{VLDBranking,
	idweb = 42,
	author = "Bryan Brancotte and Bo Yang and Guillaume Blin and Sarah Cohen-Boulakia, Alain Denise and Sylvie Hamel",
	title = "Rank aggregation with ties: Experiments and Analysis",
	journal = "Proceedings of the VLDB Endowment (PVLDB)",
	publisher = "{VLDB Endowment}",
	year = 2015,
	type_digiteo = "conf_isbn",
	url = {"http://www.vldb.org/pvldb/vol8/p1202-brancotte.pdf"}
}

[41] Johannes Starlinger, Sarah Cohen-Boulakia, Sanjeev Khanna, Susan Davidson and Ulf Leser. Layer Decomposition: An Effective Structure-based Approach for Scientific Workflow Similarity. In Proc. of the 10th IEEE International Conference in eScience. 2014. BibTeX

@inproceedings{escience2014,
	idweb = 41,
	author = "Johannes Starlinger and Sarah Cohen-Boulakia and Sanjeev Khanna and Susan Davidson and Ulf Leser",
	title = "Layer Decomposition: An Effective Structure-based Approach for Scientific Workflow Similarity",
	booktitle = "Proc. of the 10th IEEE International Conference in eScience",
	year = 2014,
	type_digiteo = "conf_isbn"
}

[40] Jiuqiang Chen, Sarah Cohen-Boulakia, Christine Froidevaux, Carole Goble, Paolo Missier and Alan Williams. DistillFlow: Removing redundancy in Scientific Workflows. In Proc. of the 22nd Int. Conf. in Scientific and Statistical Database Management (SSDBM). 2014. URL BibTeX

@inproceedings{demoDistillFlow,
	idweb = 40,
	author = "Jiuqiang Chen and Sarah Cohen-Boulakia and Christine Froidevaux and Carole Goble and Paolo Missier and Alan Williams",
	title = "DistillFlow: Removing redundancy in Scientific Workflows",
	booktitle = "Proc. of the 22nd Int. Conf. in Scientific and Statistical Database Management (SSDBM)",
	year = 2014,
	type_digiteo = "conf_isbn",
	url = {"https://www.lri.fr/~chenj/DistillFlow/"}
}

[39] Bryan Brancotte, Bastien Rance, Alain Denise and Sarah Cohen-Boulakia. ConQuR-Bio: Consensus ranking with Query Reformulation for Biological data. In DILS 2014, Tenth International Workshop in Data Integration in the Life Sciences 8574. 2014, 128-142. URL BibTeX

@inproceedings{conqur2014,
	idweb = 39,
	author = "Bryan Brancotte and Bastien Rance and Alain Denise and Sarah Cohen-Boulakia",
	title = "ConQuR-Bio: Consensus ranking with Query Reformulation for Biological data",
	booktitle = "DILS 2014, Tenth International Workshop in Data Integration in the Life Sciences",
	year = 2014,
	pages = "128-142",
	series = "Lecture Notes in Computer Science",
	volume = 8574,
	publisher = "Springer",
	type_digiteo = "conf_isbn",
	url = {"http://conqur-bio.lri.fr/index.html"}
}

[38] Johannes Starlinger, Bryan Brancotte, Sarah Cohen-Boulakia and Ulf Leser. Similarity Search for Scientific Workflows. Proceedings of the VLDB Endowment (PVLDB), 2014. URL BibTeX

@article{VLDBworkflows,
	idweb = 38,
	author = "Johannes Starlinger and Bryan Brancotte and Sarah Cohen-Boulakia and Ulf Leser",
	title = "Similarity Search for Scientific Workflows",
	journal = "Proceedings of the VLDB Endowment (PVLDB)",
	publisher = "{VLDB Endowment}",
	year = 2014,
	type_digiteo = "conf_isbn",
	url = {"http://www.vldb.org/pvldb/vol7/p1143-starlinger.pdf"}
}

[37] Sarah Cohen-Boulakia, Jiuqiang Chen, Carole Goble, Paolo Missier, Alan Williams and Christine Froidevaux. Distilling Structure in Taverna Scientific Workflows: A refactoring approach.. BMC Bioinformatics 15(1):S12, 2014. PDF BibTeX

@article{BMCsarah,
	idweb = 37,
	author = "Sarah Cohen-Boulakia and Jiuqiang Chen and Carole Goble and Paolo Missier and Alan Williams and Christine Froidevaux",
	title = "Distilling Structure in Taverna Scientific Workflows: A refactoring approach.",
	journal = "BMC Bioinformatics",
	volume = 15,
	number = 1,
	year = 2014,
	pages = "S12",
	pdf = "http://www.biomedcentral.com/1471-2105/15/S1/S12",
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US",
	x-support = "revue",
	x-type = "article"
}

[36] Johannes Starlinger, Sarah Cohen-Boulakia and Ulf Leser. (Re)Use in Public Scientific Workflow Repositories.. In Proc. of the 22nd Int. Conf. in Scientific and Statistical Database Management (SSDBM). 2012. BibTeX

@inproceedings{ssdbm,
	idweb = 36,
	author = "Johannes Starlinger and Sarah Cohen-Boulakia and Ulf Leser",
	title = "(Re)Use in Public Scientific Workflow Repositories.",
	booktitle = "Proc. of the 22nd Int. Conf. in Scientific and Statistical Database Management (SSDBM)",
	year = 2012,
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US",
	x-support = "actes",
	x-type = "inproceedings"
}

[35] Sarah Cohen-Boulakia, Christine Froidevaux and Jiuqiang Chen. Scientific Workflow Rewriting while Preserving Provenance. In Proc. of the 8th IEEE International Conference in eScience. 2012. BibTeX

@inproceedings{escience,
	idweb = 35,
	author = "Sarah Cohen-Boulakia and Christine Froidevaux and Jiuqiang Chen",
	title = "Scientific Workflow Rewriting while Preserving Provenance",
	booktitle = "Proc. of the 8th IEEE International Conference in eScience",
	year = 2012,
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI",
	x-international-audience = "yes",
	x-pays = "US",
	x-support = "actes",
	x-type = "inproceedings"
}

[34] Sarah Cohen-Boulakia, Christine Froidevaux and Jiuqiang Chen. Reecriture de workflows scientifiques et provenance. In Proc. of the 28th Journees de Bases de Donnees Avancees. 2012. BibTeX

@inproceedings{bda,
	idweb = 34,
	author = "Sarah Cohen-Boulakia and Christine Froidevaux and Jiuqiang Chen",
	title = "Reecriture de workflows scientifiques et provenance",
	booktitle = "Proc. of the 28th Journees de Bases de Donnees Avancees",
	year = 2012,
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI",
	x-international-audience = "no",
	x-pays = "FR",
	x-support = "actes",
	x-type = "inproceedings"
}

[33] Sarah Cohen-Boulakia, Christine Froidevaux, Carole Goble, Alan Williams and Jiuqiang Chen. Distilling scientific workflow structure. EMBnet Journal, Proc. of the 12th International Workshop on Network Tools and Applications in Biology, Nettab 2012 (poster) 18(B), 2012. BibTeX

@article{Nettab,
	idweb = 33,
	author = "Sarah Cohen-Boulakia and Christine Froidevaux and Carole Goble and Alan Williams and Jiuqiang Chen",
	title = "Distilling scientific workflow structure",
	journal = "EMBnet Journal, Proc. of the 12th International Workshop on Network Tools and Applications in Biology, Nettab 2012 (poster)",
	volume = 18,
	number = "B",
	year = 2012,
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI",
	x-international-audience = "yes",
	x-pays = "US",
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	x-type = "inproceedings"
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[32] Sarah Cohen-Boulakia and Ulf Leser. Search, Adapt and Reuse: The Future of Scientific Workflows.. SIGMOD Records 40(2):1187-1189, 2011. BibTeX

@article{workflows,
	idweb = 32,
	author = "Sarah Cohen-Boulakia and Ulf Leser",
	title = "Search, Adapt and Reuse: The Future of Scientific Workflows.",
	journal = "SIGMOD Records",
	volume = 40,
	number = 2,
	year = 2011,
	pages = "1187-1189",
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US",
	x-support = "revue",
	x-type = "article"
}

[31] Bryan Brancotte, Anne Biton, Isabelle Bernard-Pierrot, Francois Radvanyi, Fabien Reyal and Sarah Cohen-Boulakia. Gene List significance at-a-glance with GeneValorization.. Bioinformatics 27(8):1187-1189, 2011. BibTeX

@article{geneval,
	idweb = 31,
	author = "Bryan Brancotte and Anne Biton and Isabelle Bernard-Pierrot and Francois Radvanyi and Fabien Reyal and Sarah Cohen-Boulakia",
	title = "Gene List significance at-a-glance with GeneValorization.",
	journal = "Bioinformatics",
	volume = 27,
	number = 8,
	year = 2011,
	pages = "1187-1189",
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US",
	x-proceedings = "yes",
	x-support = "revue",
	x-type = "article"
}

[30] Sarah Cohen-Boulakia and Ulf Leser. Next generation data integration for Life Sciences. In Proc. of the 25th Int. Conf. on Data Engineering (ICDE), IEEE. 2011, 1366-1369. BibTeX

@inproceedings{ICDE2011,
	idweb = 30,
	author = "Sarah Cohen-Boulakia and Ulf Leser",
	title = "Next generation data integration for Life Sciences",
	booktitle = "Proc. of the 25th Int. Conf. on Data Engineering (ICDE), IEEE",
	pages = "1366-1369",
	year = 2011,
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US",
	x-proceedings = "yes",
	x-support = "actes",
	x-type = "article"
}

[29] Sarah Cohen-Boulakia, Alain Denise and Sylvie Hamel. Using medians to generate consensus rankings for biological data. In Proc. SSDBM: Scientific and Statistical Database Management Conference. 2011, 73–90. BibTeX

@inproceedings{CoDeHaSSDBM2011,
	idweb = 29,
	author = "Sarah Cohen-Boulakia and Alain Denise and Sylvie Hamel",
	title = "Using medians to generate consensus rankings for biological data",
	booktitle = "Proc. SSDBM: Scientific and Statistical Database Management Conference",
	series = "Lecture Notes in Computer Science 6809",
	publisher = "Springer",
	pages = "73--90",
	year = 2011,
	organization = "Portland",
	type_publi = "icolcomlec",
	x-equipes = "bioinfo EXT",
	x-support = "actes",
	x-type = "articlelong"
}

[28] Sudeepa Roy Susan Davidson Sanjeev Khanna and Sarah Cohen-Boulakia. Privacy Issues in Scientific Workflow Provenance. In Proc. of the 1st Int. Workshop on Workflow Approaches to New Data-centric Science (SIGMOD Workshop). 2010. BibTeX

@inproceedings{WANDS2010,
	idweb = 28,
	author = "Susan Davidson, Sanjeev Khanna, Sudeepa Roy and Sarah Cohen-Boulakia",
	title = "Privacy Issues in Scientific Workflow Provenance",
	booktitle = "Proc. of the 1st Int. Workshop on Workflow Approaches to New Data-centric Science (SIGMOD Workshop)",
	year = 2010,
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
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	x-type = "article"
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[27] Zoé Lacroix, Cartik R Kothari, Peter Mork, Rami Rifaieh, Mark Wilkinson, Juliana Freire and Sarah Cohen-Boulakia. Biological Resource Discovery. In Encyclopedia of Database Systems. Springer US, 2009, pages 220-223. BibTeX

@incollection{resource,
	idweb = 27,
	author = "Zo{\'e} Lacroix and Cartik R. Kothari and Peter Mork and Rami Rifaieh and Mark Wilkinson and Juliana Freire and Sarah Cohen-Boulakia",
	title = "Biological Resource Discovery",
	booktitle = "Encyclopedia of Database Systems",
	publisher = "Springer US",
	year = 2009,
	pages = "220-223",
	bibsource = "DBLP, http://dblp.uni-trier.de",
	ee = "http://dx.doi.org/10.1007/978-0-387-39940-9_1560",
	owner = "ponty",
	timestamp = "2009.11.29",
	x-editorial-board = "no",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US,CA",
	x-proceedings = "no",
	x-support = "ouvrage",
	x-type = "chapitre"
}

[26] Sarah Cohen-Boulakia and Wang Chiew Tan. Provenance in Scientific Databases. In Encyclopedia of Database Systems. Springer US, 2009, pages 2202-2207. BibTeX

@incollection{prov,
	idweb = 26,
	author = "Sarah Cohen-Boulakia and Wang Chiew Tan",
	title = "Provenance in Scientific Databases",
	booktitle = "Encyclopedia of Database Systems",
	publisher = "Springer US",
	year = 2009,
	pages = "2202-2207",
	bibsource = "DBLP, http://dblp.uni-trier.de",
	ee = "http://dx.doi.org/10.1007/978-0-387-39940-9_282",
	owner = "ponty",
	timestamp = "2009.11.29",
	x-editorial-board = "no",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US",
	x-proceedings = "no",
	x-support = "ouvrage",
	x-type = "chapitre"
}

[25] Zoé Lacroix, Cartik R Kothari, Peter Mork, Mark Wilkinson and Sarah Cohen-Boulakia. Biological Metadata Management. In Encyclopedia of Database Systems. Springer US, 2009, pages 215-219. BibTeX

@incollection{metadata,
	idweb = 25,
	author = "Zo{\'e} Lacroix and Cartik R. Kothari and Peter Mork and Mark Wilkinson and Sarah Cohen-Boulakia",
	title = "Biological Metadata Management",
	booktitle = "Encyclopedia of Database Systems",
	publisher = "Springer US",
	year = 2009,
	pages = "215-219",
	bibsource = "DBLP, http://dblp.uni-trier.de",
	ee = "http://dx.doi.org/10.1007/978-0-387-39940-9_628",
	owner = "ponty",
	timestamp = "2009.11.29",
	x-editorial-board = "no",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US,CA",
	x-proceedings = "no",
	x-support = "ouvrage",
	x-type = "chapitre"
}

[24] Zhuowei Bao, Sarah Cohen-Boulakia, Susan Davidson, Anat Eyal and Sanjeev Khanna. Differencing Provenance in Scientific Workflows. In Proc. of the 25th Int. Conf. on Data Engineering (ICDE), IEEE. 2009, 808-819. BibTeX

@inproceedings{icde2009,
	idweb = 24,
	author = "Zhuowei Bao and Sarah Cohen-Boulakia and Susan Davidson and Anat Eyal and Sanjeev Khanna",
	title = "Differencing Provenance in Scientific Workflows",
	booktitle = "Proc. of the 25th Int. Conf. on Data Engineering (ICDE), IEEE",
	year = 2009,
	pages = "808-819",
	owner = "ponty",
	timestamp = "2009.11.05",
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US",
	x-proceedings = "yes",
	x-support = "actes",
	x-type = "article"
}

[23] Zhuowei Bao, Sarah Cohen-Boulakia, Susan Davidson and Pierrick Girard. PDiffView: Viewing the Difference in Provenance of Workflow Results. PVLDB, Proc. of the 35th Int. Conf. on Very Large Data Bases 2(2):1638-1641, 2009. BibTeX

@article{cohenVLDB,
	idweb = 23,
	author = "Zhuowei Bao and Sarah Cohen-Boulakia and Susan Davidson and Pierrick Girard",
	title = "PDiffView: Viewing the Difference in Provenance of Workflow Results",
	journal = "PVLDB, Proc. of the 35th Int. Conf. on Very Large Data Bases",
	year = 2009,
	volume = 2,
	pages = "1638-1641",
	number = 2,
	owner = "ponty",
	timestamp = "2009.11.05",
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-pays = "US",
	x-proceedings = "yes",
	x-support = "revue",
	x-type = "article"
}

[22] Sarah Cohen-Boulakia and Kevin Masini. BioBrowsing: Making the Most of the Data Available in Entrez. In 21st Int. Conf. in Scientific and Statistical Database Management (SSDBM), LNCS 5566, Springer. 2009, 283-291. BibTeX

@inproceedings{biobrowsing,
	idweb = 22,
	author = "Sarah Cohen-Boulakia and Kevin Masini",
	title = "BioBrowsing: Making the Most of the Data Available in Entrez",
	booktitle = "21st Int. Conf. in Scientific and Statistical Database Management (SSDBM), LNCS 5566, Springer",
	year = 2009,
	pages = "283-291",
	owner = "ponty",
	timestamp = "2009.11.05",
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-proceedings = "yes",
	x-support = "actes",
	x-type = "article"
}

[21] Susan Davidson, Yi Chen, Peng Sun and Sarah Cohen-Boulakia. On User Views in Scientific Workflow Systems (Invited Paper). In Proc. of the the First Int. Workshop on the role of Semantic Web in Provenance Management (ISWC 2009 Workshop). 2009. BibTeX

@inproceedings{SWPM-2009,
	idweb = 21,
	author = "Susan Davidson and Yi Chen and Peng Sun and Sarah Cohen-Boulakia",
	title = "On User Views in Scientific Workflow Systems (Invited Paper)",
	booktitle = "Proc. of the the First Int. Workshop on the role of Semantic Web in Provenance Management (ISWC 2009 Workshop)",
	year = 2009,
	owner = "ponty",
	timestamp = "2009.11.05",
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-invited-conference = "yes",
	x-pays = "US",
	x-proceedings = "yes",
	x-support = "actes",
	x-type = "article"
}

[20] Sarah Cohen-Boulakia, Olivier Biton, Shirley Cohen and Susan B Davidson. Addressing the Provenance Challenge using ZOOM. Concurrency and Computation: Practice and Experience Vol 20(5):497-506, 2008. BibTeX

@article{zoomchallenge,
	idweb = 20,
	title = "Addressing the Provenance Challenge using ZOOM",
	author = "Sarah Cohen-Boulakia and Olivier Biton and Shirley Cohen and Susan B. Davidson",
	journal = "Concurrency and Computation: Practice and Experience",
	pages = "497-506",
	type_digiteo = "revue_cl",
	volume = "Vol 20",
	number = 5,
	editor = "Wiley InterScience",
	year = 2008
}

[19] Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S Barga, Shawn Bowers, Steven P Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen-Boulakia, Susan B Davidson, Ewa Deelman, Luciano A Digiampietri, Ian T Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A Goble, Jennifer Golbeck, Paul T Groth, David A Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I Seltzer, Yogesh L Simmhan, Cláudio T Silva, Peter Slaughter, Eric G Stephan, Robert Stevens, Daniele Turi, Huy T Vo, Michael Wilde, Jun Zhao and Yong Zhao. Special Issue: The First Provenance Challenge. Concurrency and Computation: Practice and Experience 20(5):409-418, 2008. BibTeX

@article{firstprov,
	idweb = 19,
	author = {Luc Moreau and Bertram Lud{\"a}scher and Ilkay Altintas and Roger S. Barga and Shawn Bowers and Steven P. Callahan and George Chin Jr. and Ben Clifford and Shirley Cohen and Sarah Cohen-Boulakia and Susan B. Davidson and Ewa Deelman and Luciano A. Digiampietri and Ian T. Foster and Juliana Freire and James Frew and Joe Futrelle and Tara Gibson and Yolanda Gil and Carole A. Goble and Jennifer Golbeck and Paul T. Groth and David A. Holland and Sheng Jiang and Jihie Kim and David Koop and Ales Krenek and Timothy M. McPhillips and Gaurang Mehta and Simon Miles and Dominic Metzger and Steve Munroe and Jim Myers and Beth Plale and Norbert Podhorszki and Varun Ratnakar and Emanuele Santos and Carlos Eduardo Scheidegger and Karen Schuchardt and Margo I. Seltzer and Yogesh L. Simmhan and Cl{\'a}udio T. Silva and Peter Slaughter and Eric G. Stephan and Robert Stevens and Daniele Turi and Huy T. Vo and Michael Wilde and Jun Zhao and Yong Zhao},
	title = "Special Issue: The First Provenance Challenge",
	journal = "Concurrency and Computation: Practice and Experience",
	volume = 20,
	number = 5,
	year = 2008,
	pages = "409-418"
}

[18] Amos Bairoch, Sarah Cohen-Boulakia and Christine Froidevaux. Data Integration in the Life Sciences, 5th International Workshop, DILS 2008, Evry, France, June 25-27, 2008. Proceedings. Lecture Notes in Computer Science series, volume 5109, Springer, 2008. BibTeX

@book{editorDILS2008,
	idweb = 18,
	author = "Amos Bairoch and Sarah Cohen-Boulakia and Christine Froidevaux",
	title = "Data Integration in the Life Sciences, 5th International Workshop, DILS 2008, Evry, France, June 25-27, 2008. Proceedings",
	booktitle = "DILS",
	publisher = "Springer",
	series = "Lecture Notes in Computer Science",
	volume = 5109,
	year = 2008,
	isbn = "978-3-540-69827-2",
	type_digiteo = "conf_isbn"
}

[17] Amos Bairoch, Sarah Cohen-Boulakia and Christine Froidevaux. Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008. BMC Bioinformatics 9(S-8), 2008. BibTeX

@article{DILSBMC2008,
	idweb = 17,
	author = "Amos Bairoch and Sarah Cohen-Boulakia and Christine Froidevaux",
	title = "Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008",
	journal = "BMC Bioinformatics",
	volume = 9,
	number = "S-8",
	year = 2008
}

[16] Olivier Biton, Sarah Cohen-Boulakia, Susan B Davidson and Carmem S Hara. Querying and Managing Provenance through User Views in Scientific Workflows. In Proceedings of the 24th International Conference on Data Engineering, ICDE 2008. 2008, 1072-1081. BibTeX

@inproceedings{DBLP:conf/icde/BitonBDH08,
	idweb = 16,
	author = "Olivier Biton and Sarah Cohen-Boulakia and Susan B. Davidson and Carmem S. Hara",
	title = "Querying and Managing Provenance through User Views in Scientific Workflows",
	booktitle = "Proceedings of the 24th International Conference on Data Engineering, ICDE 2008",
	year = 2008,
	pages = "1072-1081",
	x-editorial-board = "yes",
	x-equipes = "AmibINRIA BioinfoLRI ext",
	x-international-audience = "yes",
	x-proceedings = "yes",
	x-support = "actes",
	x-type = "article"
}

[15] Susan B Davidson, Sarah Cohen-Boulakia, Anat Eyal, Bertram Ludäscher, Timothy M McPhillips, Shawn Bowers, Manish Kumar Anand and Juliana Freire. Provenance in Scientific Workflow Systems. IEEE Data Eng. Bull. 30(4):44-50, 2007. BibTeX

@article{reviewWorkflows,
	idweb = 15,
	author = {Susan B. Davidson and Sarah Cohen-Boulakia and Anat Eyal and Bertram Lud{\"a}scher and Timothy M. McPhillips and Shawn Bowers and Manish Kumar Anand and Juliana Freire},
	title = "Provenance in Scientific Workflow Systems",
	journal = "IEEE Data Eng. Bull.",
	volume = 30,
	number = 4,
	year = 2007,
	pages = "44-50",
	type_digiteo = "revue_cl"
}

[14] Sarah Cohen-Boulakia and Val Tannen. Data Integration in the Life Sciences, 4th International Workshop, DILS 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings. Lecture Notes in Computer Science series, volume 4544, Springer, 2007. BibTeX

@book{editorDILS2007,
	idweb = 14,
	author = "Sarah Cohen-Boulakia and Val Tannen",
	title = "Data Integration in the Life Sciences, 4th International Workshop, DILS 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings",
	booktitle = "DILS",
	publisher = "Springer",
	series = "Lecture Notes in Computer Science",
	volume = 4544,
	year = 2007,
	isbn = "978-3-540-73254-9",
	type_digiteo = "conf_isbn"
}

[13] Olivier Biton, Sarah Cohen-Boulakia and Susan B Davidson. Zoom*UserViews: Querying Relevant Provenance in Workflow Systems. In VLDB 2007, Proc. of the International Conference on Very Large Data Bases. 2007, 1366-1369. BibTeX

@inproceedings{VLDB2007,
	idweb = 13,
	author = "Olivier Biton and Sarah Cohen-Boulakia and Susan B. Davidson",
	title = "Zoom*UserViews: Querying Relevant Provenance in Workflow Systems",
	booktitle = "VLDB 2007, Proc. of the International Conference on Very Large Data Bases",
	year = 2007,
	pages = "1366-1369",
	publisher = "ACM",
	isbn = "978-1-59593-649-3",
	type_digiteo = "conf_isbn"
}

[12] Sarah Cohen-Boulakia, Olivier Biton, Susan B Davidson and Christine Froidevaux. BioGuideSRS: querying multiple sources with a user-centric perspective. Bioinformatics 23(10):1301-1303, 2007. BibTeX

@article{Bioguidesrs,
	idweb = 12,
	author = "Sarah Cohen-Boulakia and Olivier Biton and Susan B. Davidson and Christine Froidevaux",
	title = "BioGuideSRS: querying multiple sources with a user-centric perspective",
	journal = "Bioinformatics",
	volume = 23,
	number = 10,
	year = 2007,
	pages = "1301-1303",
	type_digiteo = "revue_cl"
}

[11] Shirley Cohen, Sarah Cohen-Boulakia and Susan B Davidson. Towards a Model of Provenance and User Views in Scientific Workflows. In DILS 2006, Third International Workshop in Data Integration in the Life Sciences 4075. 2006, 264-279. BibTeX

@inproceedings{zoomdils,
	idweb = 11,
	author = "Shirley Cohen and Sarah Cohen-Boulakia and Susan B. Davidson",
	title = "Towards a Model of Provenance and User Views in Scientific Workflows",
	booktitle = "DILS 2006, Third International Workshop in Data Integration in the Life Sciences",
	year = 2006,
	pages = "264-279",
	series = "Lecture Notes in Computer Science",
	volume = 4075,
	isbn = "3-540-36593-1",
	publisher = "Springer",
	type_digiteo = "conf_isbn"
}

[10] Sarah Cohen-Boulakia, Christine Froidevaux and Emmanuel Pietriga. Selecting Biological Data Sources and Tools with XPR, a Path Language for RDF. In PSB 2006, Pacific Symposium on Biocomputing. 2006, 116-127. BibTeX

@inproceedings{psb,
	idweb = 10,
	author = "Sarah Cohen-Boulakia and Christine Froidevaux and Emmanuel Pietriga",
	title = "Selecting Biological Data Sources and Tools with XPR, a Path Language for RDF",
	booktitle = "PSB 2006, Pacific Symposium on Biocomputing",
	pages = "116-127",
	publisher = "World Scientific",
	year = 2006,
	isbn = "981-256-463-2",
	type_digiteo = "conf_isbn"
}

[9] Sarah Cohen-Boulakia, Susan B Davidson, Christine Froidevaux, Zoé Lacroix and Maria-Esther Vidal. Path-based Systems to Guide Scientists in the Maze of Biological Data Sources. J. Bioinformatics and Computational Biology 4(5):1069-1096, 2006. BibTeX

@article{jbcb,
	idweb = 9,
	author = "Sarah Cohen-Boulakia and Susan B. Davidson and Christine Froidevaux and Zo{\'e} Lacroix and Maria-Esther Vidal",
	title = "Path-based Systems to Guide Scientists in the Maze of Biological Data Sources",
	journal = "J. Bioinformatics and Computational Biology",
	volume = 4,
	number = 5,
	year = 2006,
	pages = "1069-1096",
	type_digiteo = "revue_cl"
}

[8] Frederique Lisacek, Sarah Cohen-Boulakia and Ron D Appel. Proteome informatics II. Bioinformatics for comparative proteomics. Proteomics 20(6):5445-66, 2006. URL BibTeX

@article{proteomics,
	idweb = 8,
	title = "Proteome informatics II. Bioinformatics for comparative proteomics",
	author = "Frederique Lisacek and Sarah Cohen-Boulakia and Ron D. Appel",
	journal = "Proteomics",
	pages = "5445-66",
	type_digiteo = "revue_cl",
	url = "http://www.lri.fr/~cohen/articles/ismb2004.pdf",
	volume = 20,
	number = 6,
	editor = "Wiley InterScience",
	year = 2006
}

[7] Sarah Cohen-Boulakia, Susan B Davidson and Christine Froidevaux. A User-centric Framework for Accessing Biological Sources and Tools. In DILS'05, Data Integration in the Life Sciences, Lecture Notes in Computer Science (LNCS) series, LNBI 3615. 2005, 3-18. BibTeX

@inproceedings{dils05,
	idweb = 7,
	title = "A User-centric Framework for Accessing Biological Sources and Tools",
	author = "Sarah Cohen-Boulakia and Susan B. Davidson and Christine Froidevaux",
	booktitle = "DILS'05, Data Integration in the Life Sciences, Lecture Notes in Computer Science (LNCS) series, LNBI",
	pages = "3-18",
	volume = 3615,
	year = 2005,
	publisher = "Springer",
	type_digiteo = "conf_isbn"
}

[6] David Abergel, Sarah Cohen-Boulakia, Frederic Lemoine, Christine Froidevaux and Michel Termier. WInGS:A reliability controlled data warehouse for yeast. In In Proc. of JOBIM'2004, Journees Ouvertes, Biologie, Informatique et Mathematiques. 2004. BibTeX

@inproceedings{JOBIMAbergel04,
	idweb = 6,
	title = "WInGS:A reliability controlled data warehouse for yeast",
	author = "David Abergel and Sarah Cohen-Boulakia and Frederic Lemoine and Christine Froidevaux and Michel Termier",
	booktitle = "In Proc. of JOBIM'2004, Journees Ouvertes, Biologie, Informatique et Mathematiques",
	type_digiteo = "conf_autre",
	year = 2004
}

[5] Sarah Cohen-Boulakia, Severine Lair, Nicolas Stransky, Stephane Graziani, Francois Radvanyi, Emmanuel Barillot and Christine Froidevaux. Selecting biomedical data sources according to user preferences. Bioinformatics Vol 20 Suppl. 1:i86-i93, 2004. URL BibTeX

@article{ISMBcohen04,
	idweb = 5,
	title = "Selecting biomedical data sources according to user preferences",
	author = "Sarah Cohen-Boulakia and Severine Lair and Nicolas Stransky and Stephane Graziani and Francois Radvanyi and Emmanuel Barillot and Christine Froidevaux",
	journal = "Bioinformatics",
	pages = "i86-i93",
	type_digiteo = "revue_cl",
	url = "http://www.lri.fr/~cohen/articles/ismb2004.pdf",
	volume = "Vol 20 Suppl. 1",
	year = 2004
}

[4] Sarah Cohen-Boulakia, Christine Froidevaux and Severine Lair. Interrogation de sources biomedicales : gestion des preferences de l'utilisateur. In Proc. of EGC'2004, Extraction et Gestion des Connaissances. 2004. URL BibTeX

@inproceedings{EGCCohen04,
	idweb = 4,
	title = "Interrogation de sources biomedicales : gestion des preferences de l'utilisateur",
	author = "Sarah Cohen-Boulakia and Christine Froidevaux and Severine Lair",
	booktitle = "Proc. of EGC'2004, Extraction et Gestion des Connaissances",
	type_digiteo = "conf_isbn",
	url = "http://www.lri.fr/~cohen/articles/egc2004.pdf",
	year = 2004
}

[3] Alain Bidault, Sarah Cohen-Boulakia and Christine Froidevaux. Preferences for Queries in a Mediator Approach. In In Proc. of ECAI'2004, European Conference on Artificial Intelligence. 2004. URL BibTeX

@inproceedings{ECAIBidault04,
	idweb = 3,
	title = "Preferences for Queries in a Mediator Approach",
	author = "Alain Bidault and Sarah Cohen-Boulakia and Christine Froidevaux",
	booktitle = "In Proc. of ECAI'2004, European Conference on Artificial Intelligence",
	type_digiteo = "conf_isbn",
	url = "http://www.lri.fr/~cohen/articles/ecai2004.pdf",
	year = 2004
}

[2] Christine Froidevaux and Sarah Cohen-Boulakia. Integration de Sources de Donnees Genomiques du Web. In Journees scientifiques du Web Semantique (actes electroniques). 2002. URL BibTeX

@inproceedings{WebSemFroidevaux02,
	idweb = 2,
	title = "Integration de Sources de Donnees Genomiques du Web",
	author = "Christine Froidevaux and Sarah Cohen-Boulakia",
	booktitle = "Journees scientifiques du Web Semantique (actes electroniques)",
	note = "http://www.lalic.paris4.sorbonne.fr/stic/octobre/programme0209.html",
	url = "http://www.lri.fr/~chris/articles/websemchris.pdf",
	year = 2002,
	type_digiteo = "conf_autre"
}

[1] Sarah Cohen-Boulakia, Christine Froidevaux, Emmanuel Waller and Bernard Labedan. Genopage : A database of all protein modules encoded by completely sequenced genomes. In Proc. of JOBIM 2002, Journees Ouvertes, Biologie, Informatique et Mathematiques (187-193). 2002, 187-193. URL BibTeX

@inproceedings{JOBIMCohen02,
	idweb = 1,
	title = "Genopage : A database of all protein modules encoded by completely sequenced genomes",
	author = "Sarah Cohen-Boulakia and Christine Froidevaux and Emmanuel Waller and Bernard Labedan",
	booktitle = "Proc. of JOBIM 2002, Journees Ouvertes, Biologie, Informatique et Mathematiques",
	number = "187-193",
	pages = "187-193",
	type_digiteo = "conf_autre",
	url = "http://www.lri.fr/~cohen/articles/jobim2002.pdf",
	year = 2002
}